WebAug 30, 2024 · Hii, I have run the samtools coverage command for calculation of gene coverage. I got this results: #rname startpos endpos numreads covbases coverage meandepth meanbaseq meanmapq 1 1 249250621 5267569 43635507 17.5067 3.25543 36.1 55 2 1 243199373 3735452 38023900 15.6349 2.36581 36.1 56.7 3 1 198022430 … Web#rname startpos endpos numreads covbases coverage meandepth meanbaseq meanmapq NC_004310.3 1 2107794 416072 2102494 99.7486 29.603 36.6 41.6 NC_004311.2 1 1207381 235061 1185432 98.1821 29.1965 36.6 41.7 Num reads:657120 Num Bases: 98568000 Fq_Stat.csv Coverage_Stat.csv #Chr Pos Raw Depth Rmdup depth Cover …
samtools coverage - produces a histogram or table of …
WebDec 12, 2024 · The simple summary stats are great, and what I need, except for the fact that the 'covbases' statistic is defined as 'Number of covered bases with depth >= 1'. … WebYou could use samtools coverage as explained in the manual of samtoools.. Here is a example which is also described on the manual site. samtools coverage -r chr1:1M-12M input.bam#rname startpos endpos numreads covbases coverage meandepth meanbaseq meanmapqchr1 1000000 12000000 528695 1069995 9.72723 3.50281 34.4 55.8 does prince harry have 2 kids
cocbases.me CocBases
WebFeb 27, 2024 · #rname startpos endpos numreads covbases coverage meandepth meanbaseq meanmapq k141_24689 1 321 8 321 100 2.33645 35.8 39 k141_49373 1 … http://www.htslib.org/doc/samtools-coverage.html WebNov 18, 2024 · I am trying to extract column1 and column4 from multiple text files. file1.txt: #rname startpos endpos numreads covbases coverage meandepth meanbaseq … facebook stimulus check scam